Variant report
| Variant | rs4237796 |
|---|---|
| Chromosome Location | chr12:60302252-60302253 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10506402 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10877354 | 0.87[ASN][1000 genomes] |
| rs10877375 | 0.86[AFR][1000 genomes] |
| rs10877377 | 0.84[AFR][1000 genomes] |
| rs10877380 | 0.80[AFR][1000 genomes] |
| rs11173204 | 0.87[ASN][1000 genomes] |
| rs11173215 | 0.86[ASN][1000 genomes] |
| rs11173236 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11173239 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17573719 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17652383 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34176957 | 0.86[AFR][1000 genomes] |
| rs35268638 | 0.81[EUR][1000 genomes] |
| rs35680591 | 0.86[AFR][1000 genomes] |
| rs4131145 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4350394 | 0.86[AFR][1000 genomes] |
| rs4403831 | 0.86[AFR][1000 genomes] |
| rs4584615 | 0.86[ASN][1000 genomes] |
| rs4758722 | 0.81[AFR][1000 genomes] |
| rs4758864 | 0.86[ASN][1000 genomes] |
| rs61922903 | 0.84[AFR][1000 genomes] |
| rs7956399 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7960810 | 0.81[EUR][1000 genomes] |
| rs7960981 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7973587 | 0.89[AFR][1000 genomes] |
| rs8181676 | 0.84[AFR][1000 genomes] |
| rs9645804 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869425 | chr12:59746898-60479741 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | esv3365928 | chr12:60042531-60343212 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2751107 | chr12:60252000-60353533 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1055021 | chr12:60269149-60302823 | Enhancers Flanking Active TSS Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv826393 | chr12:60293625-60359283 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60296800-60320400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
