Variant report

Variant	rs4237962
Chromosome Location	chr12:10312328-10312329
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2537767	1.00[AMR][1000 genomes]
rs2617123	1.00[AMR][1000 genomes]
rs2634156	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv898758	chr12:10309477-10318497	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10306400-10313400	Weak transcription	Hela-S3	cervix
2	chr12:10307000-10312400	Weak transcription	Placenta	Placenta
3	chr12:10307000-10312800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr12:10307000-10313400	Weak transcription	Brain Anterior Caudate	brain
5	chr12:10307000-10318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:10307000-10319800	Weak transcription	Right Atrium	heart
7	chr12:10311200-10312400	Enhancers	Primary hematopoietic stem cells	blood
8	chr12:10311200-10315000	Enhancers	Primary B cells from cord blood	blood
9	chr12:10311400-10313200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr12:10311400-10313600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
11	chr12:10311400-10313600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:10311600-10316200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr12:10312200-10312600	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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