Variant report

Variant	rs4238485
Chromosome Location	chr15:93588336-93588337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93578825..93581018-chr15:93588117..93590197,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv1835897	chr15:93568884-93589740	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv526532	chr15:93570723-93597006	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv904501	chr15:93570723-93600158	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv904502	chr15:93570723-93600976	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv1043084	chr15:93572133-93598434	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv542471	chr15:93572133-93598434	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	esv1815629	chr15:93572782-93596165	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv1045427	chr15:93576982-93598440	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	nsv1054502	chr15:93580672-93611598	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv542472	chr15:93580672-93611598	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
20	nsv833096	chr15:93584742-93766257	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93574800-93599800	Weak transcription	Psoas Muscle	Psoas
2	chr15:93581000-93588600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:93581400-93588400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:93581400-93588400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:93581400-93589800	Weak transcription	Brain Substantia Nigra	brain
6	chr15:93581400-93591800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:93581600-93603600	Weak transcription	Right Atrium	heart
8	chr15:93583000-93589400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:93584400-93589600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:93585000-93588400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:93585600-93589400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:93585600-93596600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:93585800-93589400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:93585800-93589600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:93585800-93590600	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:93585800-93590600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:93585800-93595200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:93586000-93588800	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr15:93586000-93589400	Strong transcription	Dnd41	blood
20	chr15:93586000-93598600	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr15:93586200-93588600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:93586200-93589200	Strong transcription	Adipose Nuclei	Adipose
23	chr15:93586200-93589200	Strong transcription	Brain Anterior Caudate	brain
24	chr15:93586200-93589400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:93586200-93589600	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr15:93586200-93590800	Strong transcription	Esophagus	oesophagus
27	chr15:93586200-93591000	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:93586400-93600600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:93586600-93588400	Enhancers	Fetal Brain Male	brain
30	chr15:93586600-93588600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:93587000-93588400	Genic enhancers	Brain Germinal Matrix	brain
32	chr15:93587000-93588600	Genic enhancers	Rectal Smooth Muscle	rectum
33	chr15:93587000-93588800	Genic enhancers	Duodenum Smooth Muscle	Duodenum
34	chr15:93587000-93588800	Genic enhancers	Fetal Stomach	stomach
35	chr15:93587000-93600800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:93587200-93588800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:93587200-93588800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:93587200-93589000	Strong transcription	Fetal Lung	lung
39	chr15:93587200-93589000	Strong transcription	Pancreas	Pancrea
40	chr15:93587200-93589200	Strong transcription	Aorta	Aorta
41	chr15:93587200-93589400	Strong transcription	Ovary	ovary
42	chr15:93587200-93597000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:93587400-93590400	Strong transcription	Right Ventricle	heart
44	chr15:93587400-93595600	Strong transcription	Fetal Intestine Small	intestine
45	chr15:93587600-93588600	Strong transcription	Brain Cingulate Gyrus	brain
46	chr15:93587600-93589000	Strong transcription	Left Ventricle	heart
47	chr15:93587600-93589400	Strong transcription	Gastric	stomach
48	chr15:93587600-93589600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:93587600-93589800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:93587600-93590400	ZNF genes & repeats	Spleen	Spleen

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