Variant report

Variant	rs4239210
Chromosome Location	chr17:46574318-46574319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46572626..46574764-chr17:46662731..46664611,2	MCF-7	breast:
2	chr17:46574039..46576397-chr17:46577646..46580624,4	MCF-7	breast:
3	chr17:46553956..46556675-chr17:46573169..46576403,3	MCF-7	breast:
4	chr17:46572156..46575042-chr17:46583182..46586038,3	MCF-7	breast:
5	chr17:46573441..46575512-chr17:46598331..46600721,2	MCF-7	breast:
6	chr17:46574112..46575706-chr17:46580959..46582706,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206805	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11868098	0.81[ASN][1000 genomes]
rs4793854	0.81[ASN][1000 genomes]
rs6504281	0.84[ASN][1000 genomes]
rs8072250	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9904760	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	esv1002528	chr17:46566180-46575960	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46570400-46576400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:46570600-46574800	Enhancers	K562	blood
3	chr17:46570800-46575000	Weak transcription	Adipose Nuclei	Adipose
4	chr17:46571000-46574400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:46571000-46577800	Weak transcription	Colon Smooth Muscle	Colon
6	chr17:46571200-46575400	Weak transcription	Placenta	Placenta
7	chr17:46571800-46575800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:46572600-46575600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr17:46573200-46574600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:46573200-46577200	Weak transcription	A549	lung
11	chr17:46573400-46576400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr17:46574000-46576600	Enhancers	Fetal Stomach	stomach
13	chr17:46574200-46574400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:46574200-46574400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr17:46574200-46574400	Bivalent Enhancer	Fetal Lung	lung
16	chr17:46574200-46574400	Enhancers	Spleen	Spleen
17	chr17:46574200-46574400	Enhancers	HMEC	breast
18	chr17:46574200-46574400	Enhancers	HSMMtube	muscle
19	chr17:46574200-46574400	Enhancers	HUVEC	blood vessel
20	chr17:46574200-46574600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:46574200-46574600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr17:46574200-46574800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr17:46574200-46574800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr17:46574200-46574800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr17:46574200-46575200	Enhancers	NH-A	brain
26	chr17:46574200-46575800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr17:46574200-46575800	Enhancers	NHLF	lung
28	chr17:46574200-46576200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr17:46574200-46576200	Enhancers	Fetal Kidney	kidney
30	chr17:46574200-46576400	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr17:46574200-46576400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr17:46574200-46576800	Enhancers	NHEK	skin
33	chr17:46574200-46577800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr17:46574200-46578400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr17:46574200-46578600	Enhancers	HSMM	muscle
36	chr17:46574200-46579400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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