Variant report

Variant	rs4241363
Chromosome Location	chr3:133696285-133696286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133688128..133691070-chr3:133695886..133697477,3	K562	blood:
2	chr3:133696142..133700134-chr3:133702355..133707029,6	MCF-7	breast:
3	chr3:133695144..133697302-chr3:133700435..133702918,2	MCF-7	breast:
4	chr3:133688128..133690798-chr3:133696100..133697808,2	MCF-7	breast:
5	chr3:133689098..133691983-chr3:133695476..133697477,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12695598	0.87[EUR][1000 genomes]
rs12695599	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12695600	0.88[ASW][hapmap]
rs4854777	0.88[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527655	chr3:133687864-133696285	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133664800-133713000	Weak transcription	Gastric	stomach
3	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
4	chr3:133682800-133699000	Weak transcription	Stomach Mucosa	stomach
5	chr3:133687600-133696600	Weak transcription	Left Ventricle	heart
6	chr3:133687600-133697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
8	chr3:133690200-133697200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:133692600-133698200	Weak transcription	Right Atrium	heart
10	chr3:133692600-133699400	Weak transcription	Adipose Nuclei	Adipose
11	chr3:133692800-133696400	Weak transcription	Fetal Stomach	stomach
12	chr3:133692800-133697600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:133693000-133698200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:133693200-133696600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:133694200-133696600	Weak transcription	Lung	lung
16	chr3:133694400-133699200	Enhancers	Fetal Thymus	thymus
17	chr3:133694600-133703800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:133695600-133696800	Enhancers	Spleen	Spleen
19	chr3:133695600-133698800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:133695800-133705400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:133696000-133696400	Enhancers	HMEC	breast
22	chr3:133696000-133698200	Strong transcription	Placenta	Placenta
23	chr3:133696000-133709400	Weak transcription	Esophagus	oesophagus

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