Variant report

Variant	rs4241602
Chromosome Location	chr4:77987351-77987352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:77987209-77987591	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77986533..77988568-chr4:78077220..78079762,2	MCF-7	breast:
2	chr4:77981060..77983015-chr4:77986780..77989020,2	K562	blood:

Variant related genes	Relation type
CCNI	TF binding region
ENSG00000138764	Chromatin interaction

rs_ID	r²[population]
rs11722715	1.00[CHB][hapmap]
rs11737629	1.00[CHB][hapmap]
rs11946744	1.00[CHB][hapmap]
rs2009276	1.00[CHB][hapmap]
rs2010141	1.00[CHB][hapmap]
rs2216630	1.00[CHB][hapmap]
rs2216631	1.00[CHB][hapmap]
rs716024	1.00[ASW][hapmap]
rs716201	1.00[CHB][hapmap]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77957000-77993600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:77957000-77994200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:77964600-77989000	Strong transcription	Fetal Thymus	thymus
4	chr4:77966200-77988600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:77966400-77987600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:77966600-77992800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:77966800-77988600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:77967000-77988600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr4:77967200-77987600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:77967200-77987600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:77967200-77987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:77967200-77987600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:77967200-77987600	Strong transcription	Placenta	Placenta
14	chr4:77967200-77988200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr4:77967200-77988600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr4:77967200-77988600	Strong transcription	Dnd41	blood
17	chr4:77967200-77988800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:77967200-77989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:77967200-77989200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr4:77967200-77989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:77967200-77993200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:77967400-77988800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:77967400-77990400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:77967600-77988200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:77967800-77987800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:77969000-77987800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr4:77969800-77994400	Weak transcription	Stomach Mucosa	stomach
28	chr4:77970000-77988600	Weak transcription	Pancreas	Pancrea
29	chr4:77970400-77994800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:77971000-77987600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:77972600-77989600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:77973800-77994400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr4:77974000-77994800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:77974400-77987600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:77974400-77988600	Weak transcription	Psoas Muscle	Psoas
36	chr4:77975800-77995600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:77976400-77993000	Weak transcription	Fetal Brain Male	brain
38	chr4:77976600-77992600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr4:77977600-77987400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:77977800-77987600	Strong transcription	HUVEC	blood vessel
41	chr4:77977800-77991800	Weak transcription	Fetal Heart	heart
42	chr4:77978200-77987400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr4:77978200-77987600	Strong transcription	NHDF-Ad	bronchial
44	chr4:77978400-77988800	Strong transcription	HSMM	muscle
45	chr4:77978600-77988200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:77978800-77987600	Strong transcription	Fetal Intestine Large	intestine
47	chr4:77980000-77994800	Weak transcription	Colonic Mucosa	Colon
48	chr4:77980800-77987600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:77980800-77987600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr4:77981000-77989200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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