Variant report

Variant	rs4242622
Chromosome Location	chr9:86019168-86019169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85998150..86000418-chr9:86018604..86020788,2	MCF-7	breast:
2	chr9:86011563..86014986-chr9:86016916..86020141,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10115207	0.82[CEU][hapmap]
rs10119045	0.85[CEU][hapmap]
rs10512140	0.97[GIH][hapmap]
rs11140065	0.83[GIH][hapmap]
rs12337675	0.81[GIH][hapmap]
rs3860917	0.82[CEU][hapmap]
rs3904188	0.85[GIH][hapmap]
rs4097498	0.82[CEU][hapmap]
rs6559723	0.82[CEU][hapmap]
rs7023415	0.82[CEU][hapmap]
rs7037923	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4242622	C9orf103	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86000000-86020600	Weak transcription	Fetal Brain Female	brain
2	chr9:86005400-86021000	Weak transcription	Right Atrium	heart
3	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
4	chr9:86016600-86023600	Weak transcription	HepG2	liver
5	chr9:86017400-86034400	Weak transcription	Psoas Muscle	Psoas
6	chr9:86018000-86019600	Enhancers	HSMMtube	muscle
7	chr9:86018200-86019200	Enhancers	Fetal Muscle Leg	muscle
8	chr9:86018200-86019400	Enhancers	Adipose Nuclei	Adipose
9	chr9:86018400-86019400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:86018400-86019400	Enhancers	NH-A	brain
11	chr9:86018400-86019600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr9:86018400-86019800	Enhancers	Fetal Heart	heart
13	chr9:86018600-86019400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:86018600-86019400	Enhancers	Fetal Stomach	stomach
15	chr9:86018600-86019400	Enhancers	Stomach Mucosa	stomach
16	chr9:86018600-86019400	Enhancers	NHDF-Ad	bronchial
17	chr9:86018600-86020800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr9:86018600-86021200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:86018800-86019200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:86018800-86019200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:86018800-86019400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:86018800-86019600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:86018800-86021600	Enhancers	Fetal Brain Male	brain
24	chr9:86019000-86019200	Enhancers	Pancreas	Pancrea
25	chr9:86019000-86020000	Weak transcription	Left Ventricle	heart
26	chr9:86019000-86020200	Weak transcription	Right Ventricle	heart
27	chr9:86019000-86022600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links