Variant report
| Variant | rs4244210 |
|---|---|
| Chromosome Location | chr5:91092920-91092921 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs1366129 | 0.88[EUR][1000 genomes] |
| rs1863948 | 0.88[EUR][1000 genomes] |
| rs1863949 | 0.88[EUR][1000 genomes] |
| rs1863950 | 0.88[EUR][1000 genomes] |
| rs2367826 | 0.87[EUR][1000 genomes] |
| rs2367828 | 0.86[EUR][1000 genomes] |
| rs2367829 | 0.86[EUR][1000 genomes] |
| rs2860382 | 0.88[EUR][1000 genomes] |
| rs2860387 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2887093 | 0.87[EUR][1000 genomes] |
| rs2913415 | 0.86[EUR][1000 genomes] |
| rs2913416 | 0.86[EUR][1000 genomes] |
| rs2913417 | 0.86[EUR][1000 genomes] |
| rs2913418 | 0.86[EUR][1000 genomes] |
| rs2913419 | 0.86[EUR][1000 genomes] |
| rs2913420 | 0.85[EUR][1000 genomes] |
| rs2913421 | 0.86[EUR][1000 genomes] |
| rs2913440 | 0.87[EUR][1000 genomes] |
| rs2913442 | 0.87[EUR][1000 genomes] |
| rs2913443 | 0.87[EUR][1000 genomes] |
| rs2913445 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2913447 | 0.88[EUR][1000 genomes] |
| rs2913448 | 0.88[EUR][1000 genomes] |
| rs2913449 | 0.88[EUR][1000 genomes] |
| rs2913450 | 0.88[EUR][1000 genomes] |
| rs2913451 | 0.88[EUR][1000 genomes] |
| rs2913452 | 0.88[EUR][1000 genomes] |
| rs2973853 | 0.86[EUR][1000 genomes] |
| rs2973854 | 0.85[EUR][1000 genomes] |
| rs2973855 | 0.86[EUR][1000 genomes] |
| rs2973856 | 0.86[EUR][1000 genomes] |
| rs2973864 | 0.88[EUR][1000 genomes] |
| rs2973865 | 0.88[EUR][1000 genomes] |
| rs2973866 | 0.88[EUR][1000 genomes] |
| rs2973867 | 0.88[EUR][1000 genomes] |
| rs4270726 | 0.82[EUR][1000 genomes] |
| rs4397159 | 0.88[EUR][1000 genomes] |
| rs4398667 | 0.87[EUR][1000 genomes] |
| rs9293576 | 0.88[EUR][1000 genomes] |
| rs9293577 | 0.88[EUR][1000 genomes] |
| rs930051 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830394 | chr5:90944049-91107749 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv830395 | chr5:90955521-91135272 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv882370 | chr5:90986181-91287437 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv882371 | chr5:91018052-91092920 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv882372 | chr5:91018052-91221647 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1017504 | chr5:91092920-91178854 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:91084200-91093200 | Weak transcription | Hela-S3 | cervix |
| 2 | chr5:91092000-91093200 | Weak transcription | A549 | lung |
