Variant report

Variant	rs424491
Chromosome Location	chr13:93844637-93844638
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1413066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1413067	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1760330	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1855269	1.00[AMR][1000 genomes]
rs2781035	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319521	0.80[AFR][1000 genomes]
rs372160	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs380416	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs380786	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs390904	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs394973	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs412938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs417537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs421381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs421861	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs425257	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs427399	0.90[AFR][1000 genomes]
rs427409	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs427503	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs428015	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs443603	0.84[AFR][1000 genomes]
rs444365	0.92[AFR][1000 genomes]
rs489911	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7330458	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832682	chr13:93700861-93874801	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900912	chr13:93800114-93853929	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900913	chr13:93814026-93853929	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900914	chr13:93814026-93858612	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv900915	chr13:93814026-93861348	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv900916	chr13:93814026-93869041	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv456076	chr13:93816293-93853929	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv562748	chr13:93816293-93853929	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900917	chr13:93816293-93858612	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv900918	chr13:93816293-93861348	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93844400-93844800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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