Variant report

Variant	rs4247298
Chromosome Location	chr11:32721194-32721195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1038554	0.85[EUR][1000 genomes]
rs10734413	0.83[EUR][1000 genomes]
rs10742286	0.81[EUR][1000 genomes]
rs10767954	0.84[EUR][1000 genomes]
rs10767956	0.83[EUR][1000 genomes]
rs10835956	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10835958	0.82[EUR][1000 genomes]
rs10835959	0.82[EUR][1000 genomes]
rs10835966	0.80[EUR][1000 genomes]
rs11031938	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11031940	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11031963	0.81[EUR][1000 genomes]
rs12293058	0.84[EUR][1000 genomes]
rs1324397	0.84[EUR][1000 genomes]
rs1486582	0.84[EUR][1000 genomes]
rs201847	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs201848	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2036795	0.85[EUR][1000 genomes]
rs2129307	0.84[EUR][1000 genomes]
rs2171242	0.84[EUR][1000 genomes]
rs2419403	0.84[EUR][1000 genomes]
rs2748353	0.85[EUR][1000 genomes]
rs4551733	0.83[EUR][1000 genomes]
rs7104435	0.83[EUR][1000 genomes]
rs7105305	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7118792	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7129723	0.85[EUR][1000 genomes]
rs7932758	0.86[EUR][1000 genomes]
rs7938914	0.81[EUR][1000 genomes]
rs7942796	0.84[EUR][1000 genomes]
rs7947996	0.85[EUR][1000 genomes]
rs966028	0.84[EUR][1000 genomes]
rs9787914	0.84[EUR][1000 genomes]
rs9943472	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043616	chr11:32702734-32734607	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32711000-32725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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