Variant report

Variant	rs4251971
Chromosome Location	chr2:113875940-113875941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113863108..113865660-chr2:113875310..113877504,3	MCF-7	breast:
2	chr2:113874258..113877773-chr2:113883397..113886122,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136689	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4251960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1003928	chr2:113846503-113887782	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv979338	chr2:113869830-113880320	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113873200-113876000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:113873600-113876000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr2:113873600-113876000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr2:113874200-113876000	Enhancers	NHDF-Ad	bronchial
5	chr2:113874200-113877200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:113874400-113877000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:113874600-113876000	Enhancers	K562	blood
8	chr2:113874600-113877600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr2:113874600-113878400	Weak transcription	GM12878-XiMat	blood
10	chr2:113874800-113878800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:113875000-113877000	Weak transcription	Small Intestine	intestine
12	chr2:113875000-113878600	Active TSS	Esophagus	oesophagus
13	chr2:113875400-113876000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:113875400-113876000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:113875400-113876000	Enhancers	Gastric	stomach
16	chr2:113875400-113876200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:113875400-113876200	Flanking Active TSS	NHEK	skin
18	chr2:113875400-113876600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:113875400-113887400	Weak transcription	Spleen	Spleen
20	chr2:113875600-113876000	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr2:113875600-113876200	Flanking Active TSS	HMEC	breast
22	chr2:113875600-113876800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:113875600-113878400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr2:113875600-113881000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr2:113875800-113876000	Active TSS	Stomach Mucosa	stomach
26	chr2:113875800-113877600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:113875800-113880800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:113875800-113881000	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links