Variant report

Variant	rs425203
Chromosome Location	chr5:57917792-57917793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs109371	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158972	0.91[AFR][1000 genomes]
rs158973	0.91[AFR][1000 genomes]
rs158977	0.82[LWK][hapmap];0.88[MKK][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs169705	0.89[LWK][hapmap];0.88[MKK][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes]
rs2545791	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs292981	0.83[AFR][1000 genomes]
rs292983	0.81[YRI][hapmap]
rs377601	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs377695	0.94[AFR][1000 genomes]
rs393390	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs394979	0.92[AFR][1000 genomes]
rs404701	0.94[AFR][1000 genomes]
rs413605	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs423522	0.93[AFR][1000 genomes]
rs430261	0.91[AFR][1000 genomes]
rs441085	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs449804	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57913400-57919200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:57913600-57919000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:57914000-57918200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:57917200-57919000	Weak transcription	Fetal Brain Male	brain
5	chr5:57917600-57918400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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