Variant report

Variant	rs4252184
Chromosome Location	chr6:161122834-161122835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2144725	1.00[EUR][1000 genomes]
rs41266344	1.00[EUR][1000 genomes]
rs41269140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41269142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41269852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41269874	1.00[EUR][1000 genomes]
rs41269890	1.00[EUR][1000 genomes]
rs41270988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252053	0.85[AFR][1000 genomes]
rs4252194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4365904	1.00[EUR][1000 genomes]
rs6928191	1.00[EUR][1000 genomes]
rs73784275	1.00[EUR][1000 genomes]
rs9457996	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv981222	chr6:161121517-161135479	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161122600-161124000	Enhancers	HepG2	liver
2	chr6:161122800-161123200	Flanking Active TSS	Liver	Liver
3	chr6:161122800-161123200	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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