Variant report

Variant	rs4252914
Chromosome Location	chr4:77974651-77974652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77972518..77975402-chr4:78077569..78079787,3	MCF-7	breast:
2	chr4:77971129..77974838-chr4:77995364..77997908,3	MCF-7	breast:
3	chr4:77973346..77979214-chr4:77995835..77998143,7	K562	blood:
4	chr4:77969411..77972049-chr4:77973762..77976688,2	K562	blood:
5	chr4:77971806..77975374-chr4:77976932..77979619,3	MCF-7	breast:
6	chr4:77972061..77975339-chr4:77995762..77998164,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17002333	1.00[AMR][1000 genomes]
rs4252785	0.86[LWK][hapmap];0.95[MKK][hapmap]
rs4252787	1.00[AMR][1000 genomes]
rs4252798	1.00[AMR][1000 genomes]
rs4252801	1.00[AMR][1000 genomes]
rs4252805	1.00[AMR][1000 genomes]
rs4252824	1.00[AMR][1000 genomes]
rs4252825	0.94[LWK][hapmap];1.00[MKK][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252830	1.00[AMR][1000 genomes]
rs4252852	1.00[AMR][1000 genomes]
rs4252854	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252860	1.00[AMR][1000 genomes]
rs4252870	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs4252871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252874	1.00[AMR][1000 genomes]
rs4252888	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252896	0.85[MKK][hapmap]
rs4252901	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252908	1.00[AMR][1000 genomes]
rs4252915	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252916	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4252933	1.00[AMR][1000 genomes]
rs4252953	0.87[AFR][1000 genomes]
rs4252954	1.00[AMR][1000 genomes]
rs61074816	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7688560	0.82[YRI][hapmap]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77937400-77981400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:77944200-77983200	Weak transcription	Small Intestine	intestine
3	chr4:77954800-77975600	Weak transcription	Fetal Brain Male	brain
4	chr4:77956200-77978600	Weak transcription	Colonic Mucosa	Colon
5	chr4:77957000-77993600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:77957000-77994200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:77960400-77983000	Weak transcription	Gastric	stomach
8	chr4:77961600-77975400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:77961800-77978000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:77963800-77981800	Strong transcription	GM12878-XiMat	blood
11	chr4:77964600-77989000	Strong transcription	Fetal Thymus	thymus
12	chr4:77965800-77979400	Strong transcription	Fetal Muscle Leg	muscle
13	chr4:77965800-77981600	Weak transcription	Right Atrium	heart
14	chr4:77966000-77981400	Strong transcription	Primary B cells from cord blood	blood
15	chr4:77966200-77980600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:77966200-77988600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:77966400-77987600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:77966600-77992800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:77966800-77977000	Strong transcription	Fetal Lung	lung
20	chr4:77966800-77979800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:77966800-77988600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:77967000-77988600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr4:77967200-77976600	Strong transcription	Primary hematopoietic stem cells	blood
24	chr4:77967200-77980000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr4:77967200-77981200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:77967200-77985600	Strong transcription	NH-A	brain
27	chr4:77967200-77987600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:77967200-77987600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:77967200-77987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:77967200-77987600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:77967200-77987600	Strong transcription	Placenta	Placenta
32	chr4:77967200-77988200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr4:77967200-77988600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr4:77967200-77988600	Strong transcription	Dnd41	blood
35	chr4:77967200-77988800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:77967200-77989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:77967200-77989200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr4:77967200-77989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:77967200-77993200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:77967400-77975200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:77967400-77977200	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:77967400-77978200	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:77967400-77979800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr4:77967400-77988800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:77967400-77990400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr4:77967600-77981200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:77967600-77988200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:77967800-77975400	Strong transcription	Liver	Liver
49	chr4:77967800-77987800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr4:77968000-77975000	Strong transcription	K562	blood

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