Variant report

Variant	rs4253847
Chromosome Location	chr4:187202255-187202256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1597643	1.00[EUR][1000 genomes]
rs2089873	1.00[EUR][1000 genomes]
rs34331648	1.00[EUR][1000 genomes]
rs4253335	1.00[EUR][1000 genomes]
rs4253336	1.00[EUR][1000 genomes]
rs4253340	1.00[EUR][1000 genomes]
rs4253341	1.00[EUR][1000 genomes]
rs4253342	1.00[EUR][1000 genomes]
rs4253344	1.00[EUR][1000 genomes]
rs4253351	1.00[EUR][1000 genomes]
rs4253353	1.00[EUR][1000 genomes]
rs4253355	1.00[EUR][1000 genomes]
rs4253356	1.00[EUR][1000 genomes]
rs4253363	1.00[EUR][1000 genomes]
rs56960412	1.00[EUR][1000 genomes]
rs5967	1.00[EUR][1000 genomes]
rs67247234	1.00[EUR][1000 genomes]
rs6815582	1.00[EUR][1000 genomes]
rs6818265	1.00[EUR][1000 genomes]
rs6834168	1.00[EUR][1000 genomes]
rs6846865	1.00[EUR][1000 genomes]
rs6852500	1.00[EUR][1000 genomes]
rs72646243	1.00[EUR][1000 genomes]
rs72646252	1.00[EUR][1000 genomes]
rs72646264	1.00[EUR][1000 genomes]
rs72646268	1.00[EUR][1000 genomes]
rs73025996	1.00[EUR][1000 genomes]
rs73027926	1.00[EUR][1000 genomes]
rs73027987	1.00[EUR][1000 genomes]
rs73027999	1.00[EUR][1000 genomes]
rs73029819	1.00[EUR][1000 genomes]
rs73873787	1.00[EUR][1000 genomes]
rs749055	1.00[EUR][1000 genomes]
rs7669220	1.00[EUR][1000 genomes]
rs7669366	1.00[EUR][1000 genomes]
rs7682106	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv931977	chr4:186912987-187364756	Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1033203	chr4:186990348-187333476	Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv537431	chr4:186990348-187333476	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv461864	chr4:187006806-187257004	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv596392	chr4:187006806-187257004	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv461865	chr4:187072383-187366649	Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv596401	chr4:187072383-187366649	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv1034638	chr4:187185385-187213477	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187191400-187204000	Weak transcription	HepG2	liver
2	chr4:187200800-187208000	Strong transcription	Liver	Liver
3	chr4:187202000-187202400	Strong transcription	Pancreas	Pancrea

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