Variant report

Variant	rs4255553
Chromosome Location	chr11:58072272-58072273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10736689	0.87[AMR][1000 genomes]
rs10792163	0.87[AMR][1000 genomes]
rs10792164	0.87[AMR][1000 genomes]
rs10792167	0.85[AMR][1000 genomes]
rs10896745	0.85[AMR][1000 genomes]
rs10896751	0.87[AMR][1000 genomes]
rs10896752	0.87[AMR][1000 genomes]
rs10896767	0.85[AMR][1000 genomes]
rs10896768	0.85[AMR][1000 genomes]
rs11229351	0.88[AMR][1000 genomes]
rs11229354	0.87[AMR][1000 genomes]
rs11229356	0.87[AMR][1000 genomes]
rs11229367	0.87[AMR][1000 genomes]
rs11229368	0.84[AMR][1000 genomes]
rs11229376	0.85[AMR][1000 genomes]
rs11603523	0.87[AMR][1000 genomes]
rs12794193	0.87[AMR][1000 genomes]
rs1938648	0.85[AMR][1000 genomes]
rs1938661	0.87[AMR][1000 genomes]
rs2003230	0.85[AMR][1000 genomes]
rs2186408	0.86[AMR][1000 genomes]
rs2211942	0.87[AMR][1000 genomes]
rs4127350	0.84[AMR][1000 genomes]
rs4127351	0.85[AMR][1000 genomes]
rs4127352	0.87[AMR][1000 genomes]
rs4453250	0.87[AMR][1000 genomes]
rs4644660	0.86[AMR][1000 genomes]
rs4939204	0.87[AMR][1000 genomes]
rs6591470	0.87[AMR][1000 genomes]
rs7112250	0.85[AMR][1000 genomes]
rs7115653	0.87[AMR][1000 genomes]
rs7117845	0.87[AMR][1000 genomes]
rs746248	0.85[AMR][1000 genomes]
rs7934850	0.85[AMR][1000 genomes]
rs7944257	0.86[AMR][1000 genomes]
rs7948107	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58071200-58079600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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