Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10504289	0.88[ASN][1000 genomes]
rs10504290	0.88[ASN][1000 genomes]
rs12155634	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924770	1.00[ASN][1000 genomes]
rs4317557	0.83[AFR][1000 genomes]
rs4371993	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4412358	1.00[ASN][1000 genomes]
rs4475464	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4478560	0.80[ASN][1000 genomes]
rs4515537	0.87[ASN][1000 genomes]
rs4562302	1.00[ASN][1000 genomes]
rs4737538	0.80[ASN][1000 genomes]
rs4738761	0.83[ASN][1000 genomes]
rs4738762	0.82[ASN][1000 genomes]
rs57150798	1.00[ASN][1000 genomes]
rs59604889	1.00[ASN][1000 genomes]
rs60762860	0.99[ASN][1000 genomes]
rs68188343	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73248443	1.00[ASN][1000 genomes]
rs73248445	0.99[ASN][1000 genomes]
rs73248446	0.99[ASN][1000 genomes]
rs73252601	0.98[ASN][1000 genomes]
rs73254103	0.98[ASN][1000 genomes]
rs9643508	0.82[ASN][1000 genomes]
rs9643509	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4257993	TOX	cis	Heart Left Ventricle	GTEx
rs4257993	RP11-25K19.1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60173000-60177400	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:60173200-60174000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr8:60173200-60176000	Enhancers	GM12878-XiMat	blood
4	chr8:60173200-60176600	Enhancers	Primary B cells from cord blood	blood
5	chr8:60173200-60177000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:60173200-60179800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:60173400-60174400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:60173400-60174400	Enhancers	Fetal Brain Male	brain
9	chr8:60173800-60174800	Enhancers	Hela-S3	cervix
10	chr8:60173800-60176600	Enhancers	Primary hematopoietic stem cells	blood

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