Variant report

Variant	rs4260399
Chromosome Location	chr3:111550762-111550763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3321819	chr3:111550487-111553035	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv3354799	chr3:111550662-111554185	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111543800-111550800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:111544400-111556800	Weak transcription	Liver	Liver
4	chr3:111545800-111550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:111545800-111550800	Weak transcription	NHEK	skin
6	chr3:111546200-111550800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:111547600-111556800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:111549000-111550800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:111550400-111551400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:111550400-111551400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:111550600-111551000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:111550600-111551000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:111550600-111551000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:111550600-111551000	Enhancers	NH-A	brain
15	chr3:111550600-111551200	Enhancers	Primary T cells from cord blood	blood
16	chr3:111550600-111551200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:111550600-111551200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:111550600-111551200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:111550600-111551200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:111550600-111551200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:111550600-111551200	Enhancers	HMEC	breast
22	chr3:111550600-111551400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr3:111550600-111551400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:111550600-111551400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:111550600-111551400	Enhancers	Dnd41	blood
26	chr3:111550600-111551400	Enhancers	Osteobl	bone

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