Variant report

Variant	rs4261746
Chromosome Location	chr2:101221630-101221631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:101220173..101222847-chr2:101627348..101629405,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1554362	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2971015	0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv834312	chr2:101044438-101238166	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv834314	chr2:101210940-101410477	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101210400-101231800	Weak transcription	Right Atrium	heart
2	chr2:101220200-101221800	Enhancers	Fetal Brain Male	brain
3	chr2:101220400-101223200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:101220400-101228800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:101220600-101223200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:101220600-101223200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:101220600-101223200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:101220600-101223200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:101220600-101223200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:101220600-101223600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:101220600-101223600	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:101221000-101223000	Weak transcription	Fetal Brain Female	brain
13	chr2:101221000-101223000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:101221000-101223200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:101221000-101223200	Weak transcription	Brain Substantia Nigra	brain
16	chr2:101221000-101223400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:101221000-101223400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:101221000-101223600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:101221000-101227000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:101221200-101223200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:101221200-101223200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:101221200-101226600	Weak transcription	HSMMtube	muscle
23	chr2:101221200-101227000	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:101221400-101223000	Weak transcription	Brain Anterior Caudate	brain
25	chr2:101221400-101223200	Weak transcription	Brain Angular Gyrus	brain
26	chr2:101221400-101223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:101221600-101223000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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