Variant report

Variant	rs426191
Chromosome Location	chr15:93200452-93200453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
FAM174B	TF binding region
ENSG00000072310	Chromatin interaction
ENSG00000170860	Chromatin interaction
ENSG00000154767	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs364751	1.00[AMR][1000 genomes]
rs375744	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs380140	1.00[AMR][1000 genomes]
rs380271	1.00[AMR][1000 genomes]
rs392482	1.00[AMR][1000 genomes]
rs426221	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs444954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs451268	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs501381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93199200-93200600	Enhancers	Gastric	stomach
2	chr15:93199200-93201000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:93199600-93200600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr15:93199600-93202400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:93199600-93210000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:93200000-93207600	Weak transcription	Stomach Mucosa	stomach
7	chr15:93200200-93201000	Weak transcription	Ovary	ovary
8	chr15:93200200-93202400	Weak transcription	GM12878-XiMat	blood
9	chr15:93200200-93207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:93200200-93207600	Weak transcription	Pancreas	Pancrea
11	chr15:93200400-93200800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:93200400-93201200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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