Variant report

Variant	rs4262563
Chromosome Location	chr1:102522135-102522136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10449717	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164369	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583493	0.82[EUR][1000 genomes]
rs11584979	0.82[EUR][1000 genomes]
rs12118113	0.91[ASN][1000 genomes]
rs12746978	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12747450	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415092	0.91[ASN][1000 genomes]
rs7536265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2422183	chr1:102450736-102796819	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102521200-102522600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:102521200-102522800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:102521400-102522600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:102521600-102522800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:102521800-102522400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:102522000-102522600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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