Variant report

Variant	rs4265510
Chromosome Location	chr10:91723424-91723425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91722915..91725484-chr10:91726332..91728860,2	MCF-7	breast:
2	chr10:91718660..91720369-chr10:91722902..91725645,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10785924	0.80[EUR][1000 genomes]
rs11591672	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11812465	0.86[CEU][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs11818637	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1274128	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1274136	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1274138	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1274143	0.84[AMR][1000 genomes]
rs1616391	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1627738	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1748491	0.81[AMR][1000 genomes]
rs1777941	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1777942	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1777953	0.81[AMR][1000 genomes]
rs1886409	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1924707	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2798614	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2798615	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2900816	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72820739	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1048021	chr10:91703053-91748404	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv551876	chr10:91704474-91735093	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91718600-91725600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:91719800-91739800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:91721800-91724400	Enhancers	NHEK	skin
4	chr10:91722000-91723800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:91722600-91724400	Enhancers	HMEC	breast

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