Variant report

Variant	rs4266057
Chromosome Location	chr2:47866656-47866657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1574378	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998314	chr2:47720420-47959168	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv817599	chr2:47738456-47961099	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv457396	chr2:47866133-47956844	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv581771	chr2:47866133-47956844	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47864000-47869000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:47864400-47868400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:47864400-47869000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:47864600-47868200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:47864600-47868600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:47864600-47881200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:47865000-47866800	Bivalent Enhancer	K562	blood
8	chr2:47866400-47866800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:47866400-47866800	Enhancers	Hela-S3	cervix
10	chr2:47866400-47867000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:47866600-47866800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:47866600-47866800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:47866600-47868400	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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