Variant report

Variant	rs4266145
Chromosome Location	chr3:156777385-156777386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1032042	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[ASN][1000 genomes]
rs10936057	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes]
rs10936060	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1384542	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes]
rs1482860	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1482863	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1552194	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[ASN][1000 genomes]
rs1600976	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1905208	0.87[ASN][1000 genomes]
rs2128536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2321459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4574238	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[ASN][1000 genomes]
rs4680326	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.84[ASN][1000 genomes]
rs4680328	0.85[ASN][1000 genomes]
rs4680333	0.97[ASN][1000 genomes]
rs4680334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6441107	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6441109	1.00[ASN][1000 genomes]
rs6765256	0.91[ASN][1000 genomes]
rs6769719	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[ASN][1000 genomes]
rs6774012	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6779199	0.85[ASN][1000 genomes]
rs6802521	0.87[ASN][1000 genomes]
rs7616559	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[ASN][1000 genomes]
rs7621842	0.81[ASN][1000 genomes]
rs922865	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9818427	0.87[ASN][1000 genomes]
rs9829700	0.87[ASN][1000 genomes]
rs9838466	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes]
rs9839037	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9840284	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.87[ASN][1000 genomes]
rs9842862	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[ASN][1000 genomes]
rs9852415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9875244	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs9880927	1.00[CHB][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4266145	MLF1	cis	cerebellum	SCAN
rs4266145	IQCJ	cis	cerebellum	SCAN
rs4266145	TIPARP	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156777000-156777400	Flanking Active TSS	GM12878-XiMat	blood

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