Variant report

Variant	rs4266295
Chromosome Location	chr4:7473516-7473517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10004803	0.87[AMR][1000 genomes]
rs10012386	0.87[AMR][1000 genomes]
rs10012715	0.87[AMR][1000 genomes]
rs10026218	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11736890	0.87[AMR][1000 genomes]
rs11736935	0.87[AMR][1000 genomes]
rs11736976	0.87[AMR][1000 genomes]
rs11736984	0.87[AMR][1000 genomes]
rs12499417	0.87[AMR][1000 genomes]
rs12499489	0.83[AMR][1000 genomes]
rs12503258	0.87[AMR][1000 genomes]
rs12503401	0.87[AMR][1000 genomes]
rs12504152	0.87[AMR][1000 genomes]
rs12506763	0.87[AMR][1000 genomes]
rs16840313	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs16840336	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16840339	0.87[AMR][1000 genomes]
rs16840348	0.87[AMR][1000 genomes]
rs16840358	0.87[AMR][1000 genomes]
rs1807425	0.80[ASN][1000 genomes]
rs28361965	0.87[AMR][1000 genomes]
rs28393125	0.87[AMR][1000 genomes]
rs28479426	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28493186	0.87[AMR][1000 genomes]
rs28494591	0.87[AMR][1000 genomes]
rs28495699	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28578475	0.87[AMR][1000 genomes]
rs28630370	0.87[AMR][1000 genomes]
rs28705151	0.87[AMR][1000 genomes]
rs28726347	0.87[AMR][1000 genomes]
rs34091365	0.87[AMR][1000 genomes]
rs34517145	0.85[AMR][1000 genomes]
rs34862495	0.87[AMR][1000 genomes]
rs35085269	0.87[AMR][1000 genomes]
rs35119395	0.90[ASN][1000 genomes]
rs35685691	0.87[AMR][1000 genomes]
rs35723054	0.87[AMR][1000 genomes]
rs36110997	0.87[AMR][1000 genomes]
rs4234813	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4234814	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs4411993	0.84[CHB][hapmap]
rs4616749	0.90[JPT][hapmap]
rs71601843	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs71601844	0.87[AMR][1000 genomes]
rs71601845	0.87[AMR][1000 genomes]
rs7683874	0.87[AMR][1000 genomes]
rs7685651	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv469758	chr4:7370083-7546250	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv878560	chr4:7402284-7475114	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv878561	chr4:7402284-7544610	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
8	nsv878563	chr4:7420785-7529367	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv878564	chr4:7421007-7535214	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
10	nsv878566	chr4:7456717-7529367	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv878567	chr4:7456717-7544610	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7471200-7473600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:7471400-7473800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:7471600-7480600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:7472000-7474000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:7472400-7475000	Weak transcription	Brain Anterior Caudate	brain
6	chr4:7473200-7476000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:7473400-7474000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
8	chr4:7473400-7475400	Enhancers	Brain Germinal Matrix	brain

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