Variant report

Variant	rs4270038
Chromosome Location	chr13:94099217-94099218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10508000	0.83[EUR][1000 genomes]
rs10508001	0.83[EUR][1000 genomes]
rs10508002	0.83[EUR][1000 genomes]
rs10508003	0.83[EUR][1000 genomes]
rs10508004	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10508005	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10851334	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11070059	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11619994	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11838734	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11841335	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11843793	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12583509	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12583911	0.84[EUR][1000 genomes]
rs12584941	0.82[EUR][1000 genomes]
rs12585159	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12854387	0.83[EUR][1000 genomes]
rs12854549	0.83[EUR][1000 genomes]
rs12855239	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12855671	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12860734	0.84[EUR][1000 genomes]
rs12866595	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12868817	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12870555	0.82[EUR][1000 genomes]
rs12871771	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12873979	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12874982	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12876057	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12877660	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16948775	0.83[EUR][1000 genomes]
rs16948800	0.84[EUR][1000 genomes]
rs16948803	0.84[EUR][1000 genomes]
rs16952683	0.83[EUR][1000 genomes]
rs17188977	0.83[EUR][1000 genomes]
rs17188998	0.83[EUR][1000 genomes]
rs17267711	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17267738	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17267745	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs33961779	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34119608	0.83[EUR][1000 genomes]
rs34136695	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35048964	0.84[EUR][1000 genomes]
rs35113180	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4378503	0.84[EUR][1000 genomes]
rs4644730	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5005454	0.84[EUR][1000 genomes]
rs5005455	0.83[EUR][1000 genomes]
rs56228951	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56247101	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61964172	0.82[EUR][1000 genomes]
rs61964173	0.83[EUR][1000 genomes]
rs61964175	0.84[EUR][1000 genomes]
rs61964180	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7320356	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7321999	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7325511	0.84[EUR][1000 genomes]
rs7325937	0.84[EUR][1000 genomes]
rs7329962	0.83[EUR][1000 genomes]
rs7331613	0.84[EUR][1000 genomes]
rs7334839	0.83[EUR][1000 genomes]
rs7337911	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7338634	0.84[EUR][1000 genomes]
rs73552665	0.84[EUR][1000 genomes]
rs74108531	0.84[EUR][1000 genomes]
rs7994743	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7998675	0.84[EUR][1000 genomes]
rs7998856	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7999019	0.84[EUR][1000 genomes]
rs7999482	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8000632	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8000712	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8000987	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs920954	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs920955	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs958053	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1048843	chr13:94064931-94103524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900920	chr13:94088707-94151937	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv1842896	chr13:94095160-94153194	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94092800-94104800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94098800-94099800	Weak transcription	Fetal Heart	heart
3	chr13:94099000-94102600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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