Variant report

Variant	rs4271563
Chromosome Location	chr15:33615588-33615589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16969003	0.91[EUR][1000 genomes]
rs16969320	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969362	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2339266	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5027490	1.00[ASN][1000 genomes]
rs57740853	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73374800	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73378425	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73378430	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8027734	0.93[ASN][1000 genomes]
rs8039430	0.98[ASN][1000 genomes]
rs907954	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33606600-33615600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:33608200-33615800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:33614400-33616400	Enhancers	Dnd41	blood
4	chr15:33614400-33617000	Enhancers	Fetal Thymus	thymus
5	chr15:33615000-33616400	Enhancers	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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