Variant report

Variant	rs4272043
Chromosome Location	chr4:76907542-76907543
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76902021..76904810-chr4:76904972..76908899,4	MCF-7	breast:
2	chr4:76906818..76908610-chr4:76910040..76912249,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198301	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12503413	1.00[CEU][hapmap]
rs1809990	1.00[AFR][1000 genomes]
rs4859579	1.00[AFR][1000 genomes]
rs7676683	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76887200-76911000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:76887800-76909600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:76894200-76910200	Weak transcription	Small Intestine	intestine
4	chr4:76895400-76910400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:76895800-76910200	Weak transcription	Spleen	Spleen
6	chr4:76897600-76910000	Weak transcription	Stomach Mucosa	stomach
7	chr4:76898600-76909200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:76899200-76910200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:76899200-76910400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:76899400-76910400	Weak transcription	Fetal Lung	lung
11	chr4:76899800-76910000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:76900200-76911000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:76900400-76910200	Weak transcription	Ovary	ovary
14	chr4:76902000-76910400	Weak transcription	Brain Germinal Matrix	brain
15	chr4:76902000-76911000	Weak transcription	Aorta	Aorta
16	chr4:76902200-76908000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:76902200-76909000	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:76902200-76909800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:76902200-76910200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:76902200-76910800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:76902200-76911000	Weak transcription	Gastric	stomach
22	chr4:76902200-76911000	Weak transcription	Pancreas	Pancrea
23	chr4:76902200-76911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:76902200-76911200	Weak transcription	Esophagus	oesophagus
25	chr4:76902400-76910200	Weak transcription	Colonic Mucosa	Colon
26	chr4:76902400-76910200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:76902400-76910200	Weak transcription	HUVEC	blood vessel
28	chr4:76902400-76910600	Weak transcription	Fetal Kidney	kidney
29	chr4:76902600-76907800	Weak transcription	Left Ventricle	heart
30	chr4:76902600-76908400	Weak transcription	Fetal Brain Female	brain
31	chr4:76902600-76909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:76902600-76909800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr4:76902600-76910000	Weak transcription	Thymus	Thymus
34	chr4:76902600-76910800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:76902600-76911000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr4:76902800-76909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:76902800-76909200	Weak transcription	Adipose Nuclei	Adipose
38	chr4:76902800-76910000	Weak transcription	Brain Angular Gyrus	brain
39	chr4:76902800-76910200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:76902800-76910200	Weak transcription	Brain Substantia Nigra	brain
41	chr4:76902800-76910200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:76902800-76910400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr4:76902800-76910400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:76902800-76910600	Weak transcription	Fetal Brain Male	brain
45	chr4:76903000-76909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:76903000-76910000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:76903000-76910000	Weak transcription	Brain Anterior Caudate	brain
48	chr4:76903000-76910000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr4:76903000-76910000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr4:76903000-76910200	Weak transcription	Rectal Mucosa Donor 31	rectum

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