Variant report

Variant	rs427227
Chromosome Location	chr1:75533821-75533822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10493561	1.00[CHB][hapmap]
rs12129029	1.00[ASN][1000 genomes]
rs12129158	1.00[ASN][1000 genomes]
rs12129193	1.00[ASN][1000 genomes]
rs12132601	1.00[CHB][hapmap]
rs12133614	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12138223	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12142460	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12723906	1.00[ASN][1000 genomes]
rs12726443	1.00[ASN][1000 genomes]
rs12729173	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12732329	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12741928	1.00[ASN][1000 genomes]
rs12750340	0.82[EUR][1000 genomes]
rs12751207	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1319656	1.00[CHB][hapmap]
rs1405312	1.00[CHB][hapmap]
rs1526502	1.00[ASN][1000 genomes]
rs1526510	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526511	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1852348	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1852349	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs188127	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280894	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35453094	1.00[ASN][1000 genomes]
rs3912426	0.82[EUR][1000 genomes]
rs432933	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4949821	1.00[CHB][hapmap]
rs607167	1.00[CHB][hapmap]
rs610159	1.00[CHB][hapmap]
rs6681258	1.00[ASN][1000 genomes]
rs6689348	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695423	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs677470	1.00[CHB][hapmap]
rs679258	1.00[CHB][hapmap]
rs684117	1.00[CHB][hapmap]
rs71500673	1.00[ASN][1000 genomes]
rs7524020	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs795569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs795571	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508293	chr1:75491417-75541615	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75533200-75534000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:75533400-75534000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:75533800-75534400	ZNF genes & repeats	Esophagus	oesophagus

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