Variant report

Variant	rs4273407
Chromosome Location	chr3:49277998-49277999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17080505	0.84[AMR][1000 genomes]
rs35220094	0.84[AMR][1000 genomes]
rs35260967	0.89[AMR][1000 genomes]
rs35395347	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008750	chr3:49208815-49362401	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49266200-49292600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:49270200-49283000	Weak transcription	Ovary	ovary
3	chr3:49273800-49278400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:49274600-49278200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:49275400-49278000	Strong transcription	Fetal Stomach	stomach
6	chr3:49275400-49278200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:49276000-49282200	Weak transcription	Left Ventricle	heart
8	chr3:49276000-49285000	Weak transcription	Lung	lung
9	chr3:49276200-49278000	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:49276200-49278000	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:49276400-49278000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:49276400-49278200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:49276400-49278200	Enhancers	Adipose Nuclei	Adipose
14	chr3:49276400-49279400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:49276400-49279800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:49276400-49282000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:49276400-49282200	Weak transcription	GM12878-XiMat	blood
18	chr3:49276400-49286200	Weak transcription	NHDF-Ad	bronchial
19	chr3:49276400-49293400	Weak transcription	NHLF	lung
20	chr3:49276400-49306400	Weak transcription	Spleen	Spleen
21	chr3:49276600-49278400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr3:49276600-49282000	Weak transcription	Fetal Heart	heart
23	chr3:49276600-49282000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:49276600-49286200	Weak transcription	Right Ventricle	heart
25	chr3:49276600-49304000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:49276800-49282000	Weak transcription	HMEC	breast
27	chr3:49277000-49278000	Weak transcription	K562	blood
28	chr3:49277000-49282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:49277000-49282000	Weak transcription	NHEK	skin
30	chr3:49277000-49282200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:49277000-49286000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:49277400-49278600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:49277400-49292600	Weak transcription	Fetal Intestine Large	intestine
34	chr3:49277600-49278000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:49277600-49278400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:49277800-49278400	Strong transcription	Osteobl	bone
37	chr3:49277800-49285600	Weak transcription	Placenta	Placenta

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