Variant report

Variant	rs4274809
Chromosome Location	chr4:171601691-171601692
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10000585	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10008580	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10011002	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10016504	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10018573	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10030592	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13119766	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13147483	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1442911	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17055995	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28413006	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28594344	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34348601	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34704211	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34764144	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34877800	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35199694	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35838289	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35978308	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4123378	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4339170	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4368570	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4591556	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4593092	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4607176	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55654575	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57901929	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58376252	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59988282	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6553537	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6828724	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6851126	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6852477	0.86[AMR][1000 genomes]
rs6853295	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6855350	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6855380	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6855386	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71607810	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71607811	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71607812	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73866043	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73866044	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73866045	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73866069	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73866098	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7667249	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7667290	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7669074	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7670495	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7670523	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7676680	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7694510	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9994841	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9996819	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9997039	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171593800-171602200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:171600400-171604000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:171601400-171601800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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