Variant report

Variant	rs4277155
Chromosome Location	chr12:72653713-72653714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10735967	0.82[EUR][1000 genomes]
rs11179133	0.91[EUR][1000 genomes]
rs11179147	0.85[EUR][1000 genomes]
rs12300104	0.84[AFR][1000 genomes]
rs4144730	0.94[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs4237862	0.94[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs4237863	0.93[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs4337081	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4384414	0.83[EUR][1000 genomes]
rs4512894	0.93[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs4589346	0.82[EUR][1000 genomes]
rs4598709	0.86[EUR][1000 genomes]
rs4760826	0.94[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs6582088	0.94[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs6582089	0.85[EUR][1000 genomes]
rs7314135	0.84[EUR][1000 genomes]
rs7972362	0.87[CEU][hapmap];0.94[GIH][hapmap];0.87[EUR][1000 genomes]
rs9668174	0.94[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422452	chr12:72485933-73175581	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv899257	chr12:72569746-73145896	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832452	chr12:72584971-72764495	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv770	chr12:72615837-72660510	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv899258	chr12:72624088-72957899	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv559362	chr12:72641784-72694691	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1044083	chr12:72647640-73275526	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72630400-72663200	Weak transcription	NH-A	brain
2	chr12:72646600-72663400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr12:72647600-72663000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:72647800-72663200	Weak transcription	Fetal Intestine Small	intestine
5	chr12:72648000-72663200	Weak transcription	NHLF	lung
6	chr12:72648600-72653800	Weak transcription	Brain Angular Gyrus	brain
7	chr12:72649600-72663400	Weak transcription	Pancreas	Pancrea
8	chr12:72651600-72663400	Weak transcription	Fetal Kidney	kidney
9	chr12:72651800-72655400	Strong transcription	Adipose Nuclei	Adipose
10	chr12:72651800-72655800	Strong transcription	Fetal Intestine Large	intestine
11	chr12:72652600-72657400	Strong transcription	HMEC	breast
12	chr12:72652600-72658000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:72653000-72654600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:72653200-72654000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:72653600-72654600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links