Variant report
Variant | rs4284237 |
---|---|
Chromosome Location | chr1:215969716-215969717 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:215964422..215967259-chr1:215967947..215970309,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10082095 | 0.89[CHB][hapmap] |
rs10779661 | 0.89[CHB][hapmap] |
rs10864203 | 0.84[CHB][hapmap] |
rs10864205 | 0.84[CHB][hapmap] |
rs10864207 | 0.89[CHB][hapmap] |
rs10864208 | 0.89[CHB][hapmap] |
rs11120635 | 0.90[CHB][hapmap] |
rs11120653 | 0.89[CHB][hapmap] |
rs11120666 | 0.89[CHB][hapmap] |
rs11526532 | 0.89[CHB][hapmap] |
rs11579793 | 0.89[CHB][hapmap] |
rs12037661 | 0.87[CHB][hapmap];0.80[JPT][hapmap] |
rs12049485 | 0.89[CHB][hapmap] |
rs12724961 | 0.84[CHB][hapmap] |
rs12725398 | 0.84[CHB][hapmap] |
rs1547765 | 0.84[CHB][hapmap] |
rs1934429 | 0.84[CHB][hapmap] |
rs2027355 | 0.89[CHB][hapmap] |
rs3884585 | 0.84[CHB][hapmap] |
rs4268330 | 0.82[CHB][hapmap] |
rs4330894 | 0.84[CHB][hapmap] |
rs4363405 | 0.94[CHB][hapmap] |
rs4390149 | 0.89[CHB][hapmap] |
rs4405115 | 0.84[CHB][hapmap] |
rs4528090 | 0.84[CHB][hapmap] |
rs4545310 | 0.88[CHB][hapmap] |
rs4571939 | 0.89[CHB][hapmap] |
rs6540912 | 0.89[CHB][hapmap];0.81[JPT][hapmap] |
rs6701765 | 0.89[CHB][hapmap];0.81[JPT][hapmap] |
rs7556611 | 0.89[CHB][hapmap] |
rs975994 | 0.83[CHB][hapmap] |
rs9887827 | 0.89[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv430324 | chr1:215649163-216082605 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
2 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
3 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
4 | nsv949671 | chr1:215942740-216120815 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv549192 | chr1:215967857-216034753 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:215967600-215971000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
2 | chr1:215967600-215971400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr1:215968000-215971200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |