Variant report

Variant	rs4287334
Chromosome Location	chr11:4739234-4739235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1032446	0.93[JPT][hapmap]
rs1032448	0.85[JPT][hapmap]
rs10500613	1.00[CEU][hapmap]
rs10734440	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap]
rs10768185	0.93[JPT][hapmap]
rs11033409	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs1123990	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs12222503	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs12271916	0.93[JPT][hapmap]
rs12277885	0.81[JPT][hapmap]
rs12575331	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs12576387	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs12577711	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap]
rs12577780	1.00[CEU][hapmap]
rs1493743	0.93[JPT][hapmap]
rs1493745	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs16931246	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs16932124	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs16932578	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs16933260	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap]
rs16933304	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs16933308	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap]
rs16933600	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1845362	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs2292157	1.00[CEU][hapmap]
rs4255531	0.83[ASN][1000 genomes]
rs4619142	0.82[EUR][1000 genomes]
rs4910667	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7111883	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7124586	0.92[ASN][1000 genomes]
rs7478759	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap]
rs7939559	1.00[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043803	chr11:4388448-4837042	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv540916	chr11:4388448-4837042	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv896911	chr11:4400801-4806872	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv3424302	chr11:4585155-4880050	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv896915	chr11:4659419-4844393	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv832056	chr11:4673001-4824890	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv1046486	chr11:4697151-4741730	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
11	nsv896916	chr11:4712353-4806872	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv437699	chr11:4721204-4741954	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4734600-4739600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:4734800-4739400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:4734800-4739800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:4734800-4739800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:4735800-4740000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:4736000-4740200	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:4739200-4739800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:4739200-4740000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:4739200-4740200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:4739200-4740200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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