Variant report

Variant	rs4289856
Chromosome Location	chr8:61813615-61813616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61812523..61815203-chr8:61818659..61820454,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4737568	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4738844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6982175	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4289856	RAB2A	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61811400-61814000	Enhancers	Primary T cells fromperipheralblood	blood
2	chr8:61811400-61815600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr8:61811800-61817000	Enhancers	Fetal Thymus	thymus
4	chr8:61812000-61817200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:61812000-61817600	Enhancers	Primary T cells from cord blood	blood
6	chr8:61812200-61821200	Weak transcription	Right Atrium	heart
7	chr8:61812400-61815600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:61812600-61815200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:61812600-61815800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:61812800-61814400	Weak transcription	Fetal Intestine Large	intestine
11	chr8:61812800-61815200	Weak transcription	Small Intestine	intestine
12	chr8:61812800-61815400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr8:61812800-61815600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:61812800-61815600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:61813000-61813800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr8:61813000-61814200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:61813000-61814200	Weak transcription	Stomach Mucosa	stomach
18	chr8:61813000-61814400	Weak transcription	GM12878-XiMat	blood
19	chr8:61813000-61814800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:61813000-61815000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:61813000-61816000	Weak transcription	Primary B cells from cord blood	blood
22	chr8:61813000-61816000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:61813200-61814800	Weak transcription	Fetal Intestine Small	intestine
24	chr8:61813200-61815600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr8:61813400-61813800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:61813400-61813800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:61813400-61814400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr8:61813400-61815600	Weak transcription	Colonic Mucosa	Colon

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