Variant report

Variant	rs4291580
Chromosome Location	chr10:6172311-6172312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6171947..6174676-chr10:6182111..6184339,3	MCF-7	breast:
2	chr10:6171306..6174580-chr10:6176089..6182503,5	MCF-7	breast:
3	chr10:6164842..6170645-chr10:6170879..6175262,7	K562	blood:
4	chr10:6171733..6174384-chr10:6244716..6246258,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11256954	0.87[AMR][1000 genomes]
rs11256957	0.87[AMR][1000 genomes]
rs12571538	0.87[AMR][1000 genomes]
rs1887031	0.87[AMR][1000 genomes]
rs61839724	0.87[AMR][1000 genomes]
rs8177659	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6167600-6174800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:6168200-6178200	Weak transcription	A549	lung
3	chr10:6168800-6172400	Enhancers	Spleen	Spleen
4	chr10:6170000-6172400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:6170000-6172400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:6170000-6172400	Enhancers	Fetal Lung	lung
7	chr10:6170000-6172400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr10:6170200-6172400	Enhancers	Primary T cells from cord blood	blood
9	chr10:6170200-6173000	Enhancers	Fetal Thymus	thymus
10	chr10:6170200-6173200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr10:6170200-6173200	Enhancers	GM12878-XiMat	blood
12	chr10:6170400-6172400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:6170400-6173200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:6170400-6173400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr10:6170400-6173600	Enhancers	NH-A	brain
16	chr10:6170600-6173200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:6170600-6173400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr10:6170800-6173400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:6171000-6172400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:6171000-6172400	Enhancers	Placenta	Placenta
21	chr10:6171000-6172400	Enhancers	Lung	lung
22	chr10:6171000-6173000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr10:6171200-6172400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr10:6171200-6172400	Enhancers	Esophagus	oesophagus
25	chr10:6171200-6173400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:6171200-6173400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:6171200-6173600	Enhancers	NHLF	lung
28	chr10:6171200-6174200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:6171200-6177000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:6171200-6178600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:6171400-6172400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:6171400-6173400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:6171400-6175200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:6171400-6183200	Weak transcription	Right Atrium	heart
35	chr10:6171800-6172400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr10:6171800-6173200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:6172000-6172400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:6172000-6172400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:6172000-6172400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:6172000-6172400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:6172000-6172400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:6172000-6172400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:6172000-6173400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:6172200-6172400	Enhancers	Duodenum Mucosa	Duodenum
45	chr10:6172200-6172400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
46	chr10:6172200-6173200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:6172200-6175600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:6172200-6175600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:6172200-6175600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:6172200-6176400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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