Variant report

Variant	rs4293677
Chromosome Location	chr3:111513018-111513019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7650348	1.00[YRI][hapmap]
rs7651391	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111496000-111514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111501600-111513600	Weak transcription	Pancreas	Pancrea
5	chr3:111501600-111518800	Weak transcription	A549	lung
6	chr3:111504000-111519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:111504200-111515400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:111507000-111513600	Weak transcription	Liver	Liver
10	chr3:111507600-111515400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:111509400-111518800	Weak transcription	HepG2	liver
12	chr3:111509400-111525800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:111510200-111522000	Weak transcription	Left Ventricle	heart
14	chr3:111511600-111513200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:111512200-111517600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:111512600-111513200	Enhancers	Lung	lung
17	chr3:111512800-111513800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:111513000-111514600	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links