Variant report

Variant	rs4296555
Chromosome Location	chr3:24997224-24997225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11914730	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11924421	1.00[ASN][1000 genomes]
rs17015468	0.85[AMR][1000 genomes]
rs4340667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57031085	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58134855	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58737252	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58790290	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59548990	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73820324	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73820339	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73820343	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73820350	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460482	chr3:24966768-25071616	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589954	chr3:24966768-25071616	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24979200-24998400	Weak transcription	Right Atrium	heart
2	chr3:24996000-25007800	Weak transcription	Fetal Kidney	kidney
3	chr3:24996800-24997400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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