Variant report

Variant	rs4298224
Chromosome Location	chr5:8894289-8894290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:8887914..8889987-chr5:8891882..8894810,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10066058	0.82[ASN][1000 genomes]
rs10067632	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10067695	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11743231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11747031	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11749514	0.88[ASN][1000 genomes]
rs11955530	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11960860	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12522763	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2962677	0.81[ASN][1000 genomes]
rs2962679	0.83[ASN][1000 genomes]
rs2962681	0.82[ASN][1000 genomes]
rs2963330	0.84[ASN][1000 genomes]
rs2963331	0.85[ASN][1000 genomes]
rs2963339	0.83[ASN][1000 genomes]
rs2963340	0.83[ASN][1000 genomes]
rs2963342	0.81[ASN][1000 genomes]
rs2963343	0.81[ASN][1000 genomes]
rs35444626	0.84[EUR][1000 genomes]
rs4701829	0.84[EUR][1000 genomes]
rs4701830	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4701831	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4702597	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4702598	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4702599	0.84[EUR][1000 genomes]
rs4702600	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62356637	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62356640	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6861563	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6872260	0.82[ASN][1000 genomes]
rs6875135	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6875415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6889793	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9313256	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9313258	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881438	chr5:8728874-9695667	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	esv3492014	chr5:8749469-9004066	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3492015	chr5:8749469-9004066	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv461944	chr5:8758041-9209831	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv597069	chr5:8758041-9209831	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1016937	chr5:8824417-9402871	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv537638	chr5:8824417-9402871	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
8	nsv918004	chr5:8824417-9402871	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
9	nsv830199	chr5:8855056-9024096	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4298224	FLJ33360	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8893800-8895000	Enhancers	Dnd41	blood
2	chr5:8894200-8895000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:8894200-8895000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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