Variant report

Variant	rs4298916
Chromosome Location	chr11:120698897-120698898
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11600735	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120684000-120707600	Weak transcription	Ovary	ovary
2	chr11:120688200-120699800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:120691400-120699000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:120694600-120703000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:120698400-120701400	Enhancers	Brain Substantia Nigra	brain
6	chr11:120698400-120701800	Enhancers	Brain Hippocampus Middle	brain
7	chr11:120698600-120699000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr11:120698600-120699800	Enhancers	Brain Angular Gyrus	brain
9	chr11:120698600-120701400	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:120698800-120699000	Bivalent Enhancer	Fetal Stomach	stomach
11	chr11:120698800-120700000	Enhancers	Fetal Brain Male	brain
12	chr11:120698800-120701400	Enhancers	Brain Anterior Caudate	brain
13	chr11:120698800-120703400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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