Variant report
Variant | rs430035 |
---|---|
Chromosome Location | chr5:14643065-14643066 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | SPI1 | chr5:14642852-14643206 | HL-60 | blood: | n/a | n/a |
2 | SPI1 | chr5:14642893-14643207 | HL-60 | blood: | n/a | n/a |
3 | SPI1 | chr5:14642897-14643070 | GM12878 | blood: | n/a | n/a |
4 | SPI1 | chr5:14642917-14643093 | K562 | blood: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
CCT6P2 | TF binding region |
rs_ID | r2[population] |
---|---|
rs13159680 | 0.83[EUR][1000 genomes] |
rs149125 | 0.90[ASN][1000 genomes] |
rs149497 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs152759 | 0.81[AFR][1000 genomes] |
rs152785 | 0.81[AFR][1000 genomes] |
rs152971 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs152972 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs152973 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs153831 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs153832 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs153833 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs153836 | 0.92[EUR][1000 genomes] |
rs153837 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs153934 | 0.83[EUR][1000 genomes] |
rs154667 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17249895 | 0.83[EUR][1000 genomes] |
rs2455240 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2455456 | 0.80[AFR][1000 genomes] |
rs250863 | 0.81[AFR][1000 genomes] |
rs250878 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs25941 | 0.91[EUR][1000 genomes] |
rs28107 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs31993 | 0.91[EUR][1000 genomes] |
rs31994 | 0.91[EUR][1000 genomes] |
rs31995 | 0.91[EUR][1000 genomes] |
rs34617159 | 0.83[EUR][1000 genomes] |
rs39609 | 0.91[EUR][1000 genomes] |
rs455943 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs456977 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs457377 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs458863 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs461015 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs461056 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs461154 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs620434 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1026914 | chr5:14237782-14751588 | Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
2 | nsv1018187 | chr5:14385164-15127103 | Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
3 | nsv830211 | chr5:14474675-14675776 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
4 | nsv1032951 | chr5:14529579-14667342 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
No data |