Variant report

Variant	rs4301353
Chromosome Location	chr7:15372788-15372789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10233930	0.94[ASN][1000 genomes]
rs10278501	0.86[ASN][1000 genomes]
rs35357526	0.83[ASN][1000 genomes]
rs35460725	0.84[ASN][1000 genomes]
rs4074352	0.87[ASN][1000 genomes]
rs4295557	0.81[ASN][1000 genomes]
rs4296942	0.86[ASN][1000 genomes]
rs4492267	0.91[ASN][1000 genomes]
rs4551230	0.86[ASN][1000 genomes]
rs66831392	0.82[ASN][1000 genomes]
rs6967336	0.83[ASN][1000 genomes]
rs73064549	0.85[ASN][1000 genomes]
rs7456411	0.85[ASN][1000 genomes]
rs7777590	0.83[ASN][1000 genomes]
rs7794090	0.87[ASN][1000 genomes]
rs7799750	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1017877	chr7:15171708-15395476	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1017559	chr7:15173335-15374132	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538745	chr7:15173335-15374132	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1027167	chr7:15279642-15409113	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1028108	chr7:15304744-15374099	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv887727	chr7:15318473-15397449	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1028314	chr7:15336831-15555412	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1033428	chr7:15343210-15554763	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1017176	chr7:15354729-15407690	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1023086	chr7:15368522-15554763	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538746	chr7:15368522-15554763	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15367800-15378600	Weak transcription	Liver	Liver
2	chr7:15370800-15374200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:15371000-15373400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:15371800-15374600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:15372400-15372800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:15372600-15372800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:15372600-15373200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr7:15372600-15374600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:15372600-15374800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:15372600-15374800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:15372600-15375000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:15372600-15375000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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