Variant report

Variant	rs4302734
Chromosome Location	chr7:3480501-3480502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 178 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10224159	0.89[JPT][hapmap]
rs10227320	0.85[JPT][hapmap]
rs10231085	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10232765	1.00[JPT][hapmap]
rs10235815	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs10239408	0.81[JPT][hapmap]
rs10242223	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs10246895	0.95[JPT][hapmap]
rs10249981	1.00[JPT][hapmap]
rs10255389	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10255605	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10259354	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10262464	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs10262783	1.00[JPT][hapmap]
rs10264065	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10270365	0.95[JPT][hapmap]
rs10274465	0.83[CEU][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs10274978	0.90[JPT][hapmap]
rs10277545	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10278205	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs10281401	0.95[JPT][hapmap]
rs10454314	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs10499327	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10807839	1.00[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap]
rs10951245	0.85[JPT][hapmap]
rs1112281	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11761186	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs11764387	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs11765903	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11766702	1.00[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11770681	1.00[CEU][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11771359	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs11977306	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11981092	1.00[JPT][hapmap]
rs12530858	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12532848	0.95[CEU][hapmap];0.84[CHD][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12534906	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12535065	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12535505	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12537325	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12537420	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12538134	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12538216	0.85[AMR][1000 genomes]
rs12540385	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12667184	0.95[JPT][hapmap]
rs12700808	0.86[CHD][hapmap]
rs12700816	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12700827	0.95[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];0.96[AMR][1000 genomes]
rs1357309	0.82[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1357310	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357312	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1403159	1.00[CEU][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1464534	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1522501	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1554497	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs1554498	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs1554502	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs1589545	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1851419	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1880610	1.00[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs1882431	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1915981	0.90[ASW][hapmap];0.83[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.85[ASN][1000 genomes]
rs1915982	0.83[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1915983	0.95[CEU][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1922018	0.90[JPT][hapmap]
rs2009182	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2056475	0.82[ASN][1000 genomes]
rs2090940	0.95[JPT][hapmap]
rs2140114	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs2141823	0.95[JPT][hapmap]
rs2177167	0.95[JPT][hapmap]
rs2178627	0.95[JPT][hapmap]
rs2178628	0.85[JPT][hapmap]
rs2204121	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2222868	0.85[JPT][hapmap]
rs2340846	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2686852	0.90[JPT][hapmap]
rs2705613	0.90[JPT][hapmap]
rs2879918	0.85[JPT][hapmap]
rs34825038	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34834420	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34886900	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35154693	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35218591	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35630637	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35785661	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4236323	1.00[CEU][hapmap];0.86[CHD][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4236326	0.90[JPT][hapmap]
rs4286835	0.95[CEU][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4311565	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4343998	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4507661	0.81[JPT][hapmap]
rs4507662	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs4613886	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4719943	0.95[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722667	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4722679	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4722695	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4722716	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4722735	0.95[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4722775	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4722830	0.90[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4722850	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs55886034	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55948465	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55986112	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6415253	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6415254	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6461984	1.00[CEU][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs6462040	0.85[CHD][hapmap];0.95[JPT][hapmap]
rs6462059	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6462061	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6462068	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6462069	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6462071	1.00[CEU][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6462083	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66604259	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68135341	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6946541	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6946678	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6947525	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs6959185	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6966730	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6967281	1.00[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6968665	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs6969267	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6969407	0.85[JPT][hapmap]
rs6978381	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6978391	0.90[JPT][hapmap]
rs73046607	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73046641	0.82[EUR][1000 genomes]
rs7457935	0.90[CEU][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7776559	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs7779688	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7780498	0.85[JPT][hapmap]
rs7784336	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7784497	1.00[CEU][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7790184	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7790430	0.95[JPT][hapmap]
rs7791343	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs7794534	0.95[JPT][hapmap]
rs7798141	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs7800089	0.90[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7802106	1.00[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7804333	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7807065	0.95[CEU][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7808934	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7809446	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7811384	0.85[JPT][hapmap]
rs939912	0.90[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9791502	0.85[JPT][hapmap]
rs9969296	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020764	chr7:3348458-3554820	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv538662	chr7:3348458-3554820	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1030484	chr7:3364990-3506102	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1018105	chr7:3365441-3506102	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1026361	chr7:3366960-3502600	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv538664	chr7:3366960-3502600	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv605893	chr7:3368197-3505231	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1015296	chr7:3381813-3560401	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv1033743	chr7:3395234-3494122	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv1029937	chr7:3408050-3506316	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv538668	chr7:3408050-3506316	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv887329	chr7:3424878-3490865	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv887330	chr7:3424878-3515437	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv528715	chr7:3451251-3598581	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv887332	chr7:3455249-3521000	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv605902	chr7:3464896-3598581	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv605903	chr7:3472721-3527925	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv887333	chr7:3475716-3542488	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4302734	TNRC18	cis	parietal	SCAN
rs4302734	C7orf50	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3468800-3482400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:3470400-3482800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:3479200-3481200	Weak transcription	Fetal Heart	heart
4	chr7:3479400-3480600	Enhancers	Left Ventricle	heart
5	chr7:3479400-3484400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:3479600-3481200	Weak transcription	HUVEC	blood vessel
7	chr7:3479600-3492600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:3479800-3483600	Weak transcription	NHEK	skin
9	chr7:3480000-3480600	Weak transcription	HSMM	muscle
10	chr7:3480000-3485600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:3480000-3508600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links