Variant report

Variant	rs4304877
Chromosome Location	chr12:25486440-25486441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10505974	1.00[ASN][1000 genomes]
rs4290328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4553442	0.97[ASN][1000 genomes]
rs4963872	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297539	0.89[ASN][1000 genomes]
rs7963303	0.94[ASN][1000 genomes]
rs7970784	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25476800-25486800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:25477000-25486600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr12:25477400-25486800	Weak transcription	NH-A	brain
4	chr12:25477400-25487400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:25481400-25486800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:25482000-25486800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:25484600-25486800	Enhancers	GM12878-XiMat	blood
8	chr12:25485200-25486800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:25485600-25486800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:25485600-25486800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:25485600-25486800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:25485800-25486600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr12:25485800-25486800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr12:25485800-25486800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:25485800-25487400	Enhancers	NHLF	lung
16	chr12:25485800-25487600	Enhancers	Hela-S3	cervix
17	chr12:25486200-25486800	Enhancers	Osteobl	bone
18	chr12:25486200-25487400	Enhancers	NHEK	skin
19	chr12:25486400-25486800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:25486400-25487000	Enhancers	Pancreas	Pancrea
21	chr12:25486400-25487000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr12:25486400-25487400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:25486400-25487400	Enhancers	Skeletal Muscle Male	skeletal muscle

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