Variant report

Variant	rs4307775
Chromosome Location	chr12:48336623-48336624
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:48290096..48306593-chr12:48332606..48350271,44	MCF-7	breast:
2	chr12:48336245..48336757-chr12:48583257..48583914,2	K562	blood:
3	chr12:48336001..48336747-chr12:48558620..48559352,3	K562	blood:
4	chr12:48297838..48300182-chr12:48335522..48337383,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111424	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2071356	0.83[AMR][1000 genomes]
rs2898045	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4237856	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4307774	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4344559	0.84[AMR][1000 genomes]
rs4366552	0.88[AMR][1000 genomes]
rs4417373	0.82[AMR][1000 genomes]
rs4494361	0.82[AMR][1000 genomes]
rs57624904	0.81[AMR][1000 genomes]
rs740025	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428589	chr12:48282920-48341192	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3423120	chr12:48335210-48338058	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48328400-48337800	Enhancers	Fetal Heart	heart
2	chr12:48332600-48339600	Weak transcription	NHDF-Ad	bronchial
3	chr12:48332800-48337400	Weak transcription	HMEC	breast
4	chr12:48332800-48337400	Weak transcription	NHEK	skin
5	chr12:48332800-48340200	Weak transcription	Right Atrium	heart
6	chr12:48333000-48339200	Weak transcription	HSMM	muscle
7	chr12:48333800-48337000	Weak transcription	Hela-S3	cervix
8	chr12:48334000-48336800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:48335000-48337000	Bivalent Enhancer	Fetal Stomach	stomach
10	chr12:48335200-48337000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:48335200-48337000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr12:48335200-48337600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr12:48335600-48337000	Enhancers	Placenta	Placenta
14	chr12:48335800-48337000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:48335800-48338200	Enhancers	Spleen	Spleen
16	chr12:48335800-48346000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr12:48336000-48336800	Bivalent Enhancer	Stomach Mucosa	stomach
18	chr12:48336000-48337000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:48336000-48337800	Enhancers	Pancreas	Pancrea
20	chr12:48336000-48338800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:48336000-48339200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr12:48336200-48337000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
23	chr12:48336200-48337200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:48336200-48338000	Enhancers	Fetal Intestine Small	intestine
25	chr12:48336200-48338200	Enhancers	Fetal Intestine Large	intestine
26	chr12:48336200-48340200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:48336200-48340400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:48336400-48337200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
29	chr12:48336600-48336800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr12:48336600-48336800	Enhancers	HSMMtube	muscle
31	chr12:48336600-48337000	Bivalent Enhancer	Colonic Mucosa	Colon
32	chr12:48336600-48338000	Enhancers	Esophagus	oesophagus
33	chr12:48336600-48339200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr12:48336600-48340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr12:48336600-48341200	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr12:48336600-48343200	Weak transcription	Right Ventricle	heart

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