Variant report

Variant	rs431057
Chromosome Location	chr13:86372263-86372264
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs410729	0.93[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs9547376	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86370000-86373400	Active TSS	Duodenum Mucosa	Duodenum
3	chr13:86370000-86373600	Active TSS	Fetal Intestine Small	intestine
4	chr13:86370200-86373600	Active TSS	Fetal Intestine Large	intestine
5	chr13:86370400-86373600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:86370400-86373600	Active TSS	Fetal Stomach	stomach
7	chr13:86370600-86373600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:86370800-86373800	Active TSS	Stomach Smooth Muscle	stomach
9	chr13:86371000-86373200	Active TSS	HMEC	breast
10	chr13:86371000-86373400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:86371000-86373600	Active TSS	Placenta Amnion	Placenta Amnion
12	chr13:86371000-86373600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr13:86371200-86373400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:86371200-86373600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:86371200-86373600	Active TSS	Fetal Lung	lung
16	chr13:86371400-86373400	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr13:86371400-86373600	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr13:86371600-86373000	Active TSS	Fetal Kidney	kidney
19	chr13:86371600-86373400	Active TSS	NHLF	lung
20	chr13:86371600-86373600	Active TSS	Fetal Muscle Leg	muscle
21	chr13:86371600-86373800	Active TSS	A549	lung
22	chr13:86372000-86373200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr13:86372200-86372400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr13:86372200-86373400	Active TSS	Right Atrium	heart
25	chr13:86372200-86373600	Active TSS	Fetal Muscle Trunk	muscle
26	chr13:86372200-86373600	Flanking Active TSS	NHEK	skin

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