Variant report

Variant	rs4312125
Chromosome Location	chr12:42173105-42173106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10748314	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10748315	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10748316	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10785287	0.97[ASN][1000 genomes]
rs10785288	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10785289	0.90[ASN][1000 genomes]
rs10785291	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10785292	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10880150	0.88[GIH][hapmap]
rs10880155	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10880156	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10880157	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11181143	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11181145	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11181146	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11181147	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12425853	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1874578	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7310677	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956552	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7966474	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs871393	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9943756	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899045	chr12:42118062-42174431	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
9	nsv1042971	chr12:42170661-42205843	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42170400-42173800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links