Variant report

Variant	rs4316229
Chromosome Location	chr9:26883149-26883150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26882206..26885004-chr9:26891360..26894322,3	MCF-7	breast:
2	chr9:26882668..26884290-chr9:26943587..26946347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120159	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1011358	0.93[ASN][1000 genomes]
rs10812480	0.86[ASN][1000 genomes]
rs10812482	0.83[AMR][1000 genomes]
rs10812485	0.90[ASN][1000 genomes]
rs10812487	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10812488	0.84[AFR][1000 genomes]
rs10967550	0.86[ASN][1000 genomes]
rs10967560	0.91[ASN][1000 genomes]
rs10967565	0.88[ASN][1000 genomes]
rs10967566	0.88[ASN][1000 genomes]
rs10967581	0.96[ASN][1000 genomes]
rs12238317	0.91[ASN][1000 genomes]
rs12345197	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17760657	0.86[ASN][1000 genomes]
rs17760820	0.88[ASN][1000 genomes]
rs2184739	0.89[ASN][1000 genomes]
rs59159685	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6475945	0.83[AMR][1000 genomes]
rs6475946	0.86[AMR][1000 genomes]
rs6475947	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7018943	0.96[ASN][1000 genomes]
rs7033238	0.86[ASN][1000 genomes]
rs7038218	0.82[AMR][1000 genomes]
rs7042133	0.82[AMR][1000 genomes]
rs7042447	0.82[AMR][1000 genomes]
rs7856462	0.84[AMR][1000 genomes]
rs7863476	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7868158	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7871868	0.91[ASN][1000 genomes]
rs7872496	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7873073	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
4	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
5	chr9:26851400-26888000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:26851800-26888600	Weak transcription	Fetal Heart	heart
7	chr9:26851800-26891600	Weak transcription	Stomach Mucosa	stomach
8	chr9:26852400-26888000	Weak transcription	NHLF	lung
9	chr9:26855800-26888200	Weak transcription	NH-A	brain
10	chr9:26856600-26888400	Weak transcription	Osteobl	bone
11	chr9:26857600-26891000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:26859800-26890000	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:26875600-26885000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr9:26875800-26887400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:26876800-26887400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:26876800-26888400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:26877400-26883400	Strong transcription	Adipose Nuclei	Adipose
18	chr9:26877400-26885000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr9:26878000-26884600	Strong transcription	Placenta	Placenta
20	chr9:26878000-26884800	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr9:26878000-26887400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:26878200-26884400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:26878200-26884400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:26878200-26888600	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr9:26878400-26883400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:26878400-26883400	Strong transcription	Brain Angular Gyrus	brain
27	chr9:26878400-26884600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:26878400-26884600	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:26878600-26883400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:26878800-26884200	Strong transcription	Fetal Intestine Large	intestine
31	chr9:26879000-26883200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:26879200-26884000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr9:26879600-26883200	Strong transcription	Primary T cells from cord blood	blood
34	chr9:26879600-26883400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:26879600-26883400	Strong transcription	Pancreas	Pancrea
36	chr9:26879800-26883400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:26880000-26884800	Strong transcription	A549	lung
38	chr9:26880200-26883400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:26880200-26884200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:26880200-26887600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:26880400-26883600	ZNF genes & repeats	Brain Germinal Matrix	brain
42	chr9:26880600-26888200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr9:26880800-26883400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:26880800-26883400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr9:26881400-26883400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:26881400-26884600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:26881400-26884600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:26881400-26884600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr9:26881400-26885800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:26881600-26883400	Strong transcription	Brain Hippocampus Middle	brain

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