Variant report

Variant	rs4317102
Chromosome Location	chr3:93971276-93971277
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12630845	0.83[EUR][1000 genomes]
rs12637776	0.82[EUR][1000 genomes]
rs12638900	0.81[EUR][1000 genomes]
rs13064887	0.89[EUR][1000 genomes]
rs13079023	0.82[EUR][1000 genomes]
rs1580098	0.83[EUR][1000 genomes]
rs1584924	0.82[EUR][1000 genomes]
rs1584925	0.88[EUR][1000 genomes]
rs1584928	0.88[EUR][1000 genomes]
rs1598219	0.82[EUR][1000 genomes]
rs1598221	0.81[EUR][1000 genomes]
rs1598222	0.82[EUR][1000 genomes]
rs1598226	0.87[EUR][1000 genomes]
rs1598227	0.87[EUR][1000 genomes]
rs1598228	0.87[EUR][1000 genomes]
rs1598229	0.82[EUR][1000 genomes]
rs1598230	0.82[EUR][1000 genomes]
rs1598231	0.88[EUR][1000 genomes]
rs1598232	0.89[EUR][1000 genomes]
rs1598233	0.89[EUR][1000 genomes]
rs1598234	0.83[EUR][1000 genomes]
rs1902104	0.89[EUR][1000 genomes]
rs2198619	0.81[EUR][1000 genomes]
rs2198620	0.81[EUR][1000 genomes]
rs33970442	0.83[EUR][1000 genomes]
rs34171637	0.80[EUR][1000 genomes]
rs34292321	0.82[EUR][1000 genomes]
rs35223750	0.83[EUR][1000 genomes]
rs35648684	0.86[EUR][1000 genomes]
rs35797019	0.80[EUR][1000 genomes]
rs35924628	0.86[EUR][1000 genomes]
rs4241463	0.82[EUR][1000 genomes]
rs4399895	0.83[EUR][1000 genomes]
rs4857070	0.82[EUR][1000 genomes]
rs4857270	0.86[EUR][1000 genomes]
rs4857281	0.84[EUR][1000 genomes]
rs4857289	0.83[EUR][1000 genomes]
rs4857290	0.89[EUR][1000 genomes]
rs62266967	0.85[EUR][1000 genomes]
rs62266989	0.89[EUR][1000 genomes]
rs67811013	0.81[EUR][1000 genomes]
rs71326817	0.83[EUR][1000 genomes]
rs7616980	0.89[EUR][1000 genomes]
rs7630241	0.83[EUR][1000 genomes]
rs7639259	0.87[EUR][1000 genomes]
rs7646963	0.82[EUR][1000 genomes]
rs897182	0.89[EUR][1000 genomes]
rs897184	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv998173	chr3:93575084-94427403	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv536644	chr3:93575084-94427403	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1008711	chr3:93575284-94427264	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv536646	chr3:93575284-94427264	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv491829	chr3:93575285-94427263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1013107	chr3:93654100-94102212	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv536648	chr3:93654100-94102212	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv877162	chr3:93779664-94278078	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv877163	chr3:93795972-94047775	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:93968800-93971400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:93968800-93971600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:93969400-93971400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:93969800-93973400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:93970800-93972000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:93971000-93976000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:93971200-93971400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:93971200-93971400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:93971200-93971600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:93971200-93975800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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