Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10804195	0.81[MEX][hapmap]
rs11695594	0.81[MEX][hapmap]
rs12986860	0.94[ASN][1000 genomes]
rs12989822	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12994770	0.86[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs12995574	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12995615	0.92[ASN][1000 genomes]
rs13013923	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13021324	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]
rs13021911	0.92[ASN][1000 genomes]
rs13025469	0.81[MEX][hapmap]
rs34613466	0.94[ASN][1000 genomes]
rs34631772	0.92[ASN][1000 genomes]
rs35330898	0.93[ASN][1000 genomes]
rs36022151	0.94[ASN][1000 genomes]
rs4302167	0.80[MEX][hapmap]
rs4439896	0.86[MEX][hapmap];0.82[AMR][1000 genomes]
rs4672614	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs59961819	0.90[ASN][1000 genomes]
rs6713894	0.81[MEX][hapmap]
rs67391867	0.94[ASN][1000 genomes]
rs67577312	0.90[ASN][1000 genomes]
rs71422745	0.80[ASN][1000 genomes]
rs9941562	0.80[ASN][1000 genomes]
rs9941563	0.80[ASN][1000 genomes]
rs9941626	0.86[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[ASN][1000 genomes]
rs9941687	0.87[ASN][1000 genomes]
rs9941688	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2753335	chr2:212322858-212424019	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv875779	chr2:212340740-212415948	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212346600-212346800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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